<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 6-27 3:55:43:] :: BOINC:: Initializing ... ok.
[2010- 6-27 3:55:43:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
[2010- 6-27 3:56:19:] :: BOINC:: Initializing ... ok.
[2010- 6-27 3:56:19:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 259 starting structures 5512.43 cpu seconds
This process generated 259 decoys from 259 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 6-29 7: 7:18:] :: BOINC:: Initializing ... ok.
[2010- 6-29 7: 7:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 6-29 12:22:31:] :: BOINC:: Initializing ... ok.
[2010- 6-29 12:22:31:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_Loopbuild__initial_build ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk6_fa ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 6-29 23:32: 0:] :: BOINC:: Initializing ... ok.
[2010- 6-29 23:32: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_Loopbuild__initial_build ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk6_fa ... success!
======================================================
DONE :: 2 starting structures 10375 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 6-30 2: 1:38:] :: BOINC:: Initializing ... ok.
[2010- 6-30 2: 1:38:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/ab_06_19_d000_top_broker_server_models.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 5 starting structures 10083.4 cpu seconds
This process generated 5 decoys from 5 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Sun Jul 4 15:53:05 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x95f7f1fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x95f190fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x95f190fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libirc.dylib
0x93c21000 - 0x93c24fff /usr/lib/system/libmathCommon.A.dylib
0x95f18000 - 0x960befff /usr/lib/libSystem.B.dylib
0x964d6000 - 0x964e4fff /usr/lib/libz.1.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=2387, iMonCtr=1
Model crash detected, will try to restart...
Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy
Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy
Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy
Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy
Sorry, too many model crashes! :-(
(2387): called boinc_finish
[2010- 7-11 11:39:37:] :: BOINC:: Initializing ... ok.
[2010- 7-11 11:39:37:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 11:22:32:] :: BOINC:: Initializing ... ok.
[2010- 7-13 11:22:32:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 12:25:54:] :: BOINC:: Initializing ... ok.
[2010- 7-13 12:25:54:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 13:32:22:] :: BOINC:: Initializing ... ok.
[2010- 7-13 13:32:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 13:33: 8:] :: BOINC:: Initializing ... ok.
[2010- 7-13 13:33: 8:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 13:42:55:] :: BOINC:: Initializing ... ok.
[2010- 7-13 13:42:55:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-13 15:54: 5:] :: BOINC:: Initializing ... ok.
[2010- 7-13 15:54: 5:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 575 starting structures 7317.02 cpu seconds
This process generated 575 decoys from 575 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-19 13:23:57:] :: BOINC:: Initializing ... ok.
[2010- 7-19 13:23:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-19 14:41:11:] :: BOINC:: Initializing ... ok.
[2010- 7-19 14:41:11:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00003
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_7 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-19 15: 5:44:] :: BOINC:: Initializing ... ok.
[2010- 7-19 15: 5:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00003
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_3 ... success!
Continuing computation from checkpoint: chk_S_00000003_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_00000003_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_00000003_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_00000003_FastRelax__chk4_fa ... success!
Starting work on structure: _00004
Starting work on structure: _00005
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-19 15:43: 5:] :: BOINC:: Initializing ... ok.
[2010- 7-19 15:43: 5:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00005
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage4_kk_3 ... success!
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
Starting work on structure: _00028
Starting work on structure: _00029
======================================================
DONE :: 1 starting structures 10461.2 cpu seconds
This process generated 29 decoys from 29 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-19 18: 8:16:] :: BOINC:: Initializing ... ok.
[2010- 7-19 18: 8:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 5:13: 0:] :: BOINC:: Initializing ... ok.
[2010- 7-20 5:13: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 6: 9: 1:] :: BOINC:: Initializing ... ok.
[2010- 7-20 6: 9: 1:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00020
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000020_ClassicAbinitio__stage_3_iter1_7 ... success!
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
Starting work on structure: _00028
Starting work on structure: _00029
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 7:22:27:] :: BOINC:: Initializing ... ok.
[2010- 7-20 7:22:27:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
[2010- 7-20 7:23:33:] :: BOINC:: Initializing ... ok.
[2010- 7-20 7:23:33:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00029
======================================================
DONE :: 1 starting structures 10698.3 cpu seconds
This process generated 29 decoys from 29 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-20 7:30:45:] :: BOINC:: Initializing ... ok.
[2010- 7-20 7:30:45:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 13:50:49:] :: BOINC:: Initializing ... ok.
[2010- 7-20 13:50:49:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 0: 9:24:] :: BOINC:: Initializing ... ok.
[2010- 7-21 0: 9:24:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 0:11:11:] :: BOINC:: Initializing ... ok.
[2010- 7-21 0:11:11:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
[2010- 7-21 1:57:58:] :: BOINC:: Initializing ... ok.
[2010- 7-21 1:57:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 3: 8:44:] :: BOINC:: Initializing ... ok.
[2010- 7-21 3: 8:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 3:41:51:] :: BOINC:: Initializing ... ok.
[2010- 7-21 3:41:51:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 12:49: 1:] :: BOINC:: Initializing ... ok.
[2010- 7-21 12:49: 3:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 16:12:40:] :: BOINC:: Initializing ... ok.
[2010- 7-21 16:12:40:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 277 starting structures 9660.98 cpu seconds
This process generated 277 decoys from 277 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-22 8: 2:10:] :: BOINC:: Initializing ... ok.
[2010- 7-22 8: 2:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
======================================================
DONE :: 1 starting structures 10342 cpu seconds
This process generated 21 decoys from 21 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-22 11: 6:23:] :: BOINC:: Initializing ... ok.
[2010- 7-22 11: 6:23:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:13:13:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:13:13:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00009
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:15:10:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:15:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00009
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:18:44:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:18:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00009
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000009_ClassicAbinitio__stage4_kk_2 ... success!
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:56:28:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:56:28:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00013
======================================================
DONE :: 1 starting structures 10110.3 cpu seconds
This process generated 13 decoys from 13 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Tue Jul 27 00:26:41 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x95f7f1fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x95f190fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x95f190fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libirc.dylib
0x93c21000 - 0x93c24fff /usr/lib/system/libmathCommon.A.dylib
0x95f18000 - 0x960befff /usr/lib/libSystem.B.dylib
0x964d6000 - 0x964e4fff /usr/lib/libz.1.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1224, iMonCtr=1
Model crash detected, will try to restart...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Tue Jul 27 00:26:43 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x95f7f1fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x95f190fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x95f190fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u4tj_1599_200_006639090/lib/libirc.dylib
0x93c21000 - 0x93c24fff /usr/lib/system/libmathCommon.A.dylib
0x95f18000 - 0x960befff /usr/lib/libSystem.B.dylib
0x964d6000 - 0x964e4fff /usr/lib/libz.1.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1224, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 60 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 61 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 68 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 69 - Return code = 1
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
Signal 3 received, exiting...
(1106): called boinc_finish
</stderr_txt>
]]>
