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Task 22269978

Task 22269978

Name oifs_43r3_ps_0069_1999050100_123_968_12184713_0
Workunit 12184713
Created 22 Dec 2022, 17:51:22 UTC
Sent 21 Jan 2023, 6:42:07 UTC
Report deadline 22 Mar 2023, 6:42:07 UTC
Received 21 Jan 2023, 8:09:00 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 5 (0x00000005) Unknown error code
Computer ID 1288224
Run time 25 min 56 sec
CPU time 25 min 31 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4.99 GFLOPS
Application version OpenIFS 43r3 Perturbed Surface v1.05
x86_64-pc-linux-gnu
Peak working set size 4,439.27 MB
Peak swap size 4,974.25 MB
Peak disk usage 1,200.68 MB
Stderr
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)</message>
<stderr_txt>
(argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu
(argv1) start_date: 1999050100
(argv2) exptid: hq0f
(argv3) unique_member_id: 0069
(argv4) batchid: 968
(argv5) wuid: 12184713
(argv6) fclen: 123
(argv7) app_name: oifs_43r3_ps
(argv8) nthreads: 1
Working directory is: /var/lib/boinc-client/slots/6
Project directory is: /var/lib/boinc-client/projects/climateprediction.net/
app name: oifs_43r3_ps
version: 1.05
Location of temp folder: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713
Copying: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /var/lib/boinc-client/slots/6/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Unzipping the app zip file: /var/lib/boinc-client/slots/6/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Copying the namelist files from: ../../projects/climateprediction.net/jf_57f6b2d6edd7a4239e2279512aa12924 to: /var/lib/boinc-client/slots/6/oifs_43r3_ps_0069_1999050100_123_968_12184713.zip
Unzipping the namelist zip file: /var/lib/boinc-client/slots/6/oifs_43r3_ps_0069_1999050100_123_968_12184713.zip
ic_ancil_file: ic_ancil_12184713
ifsdata_file: ifsdata_12184713
climate_data_file: clim_data_12184713
horiz_resolution: 159
vert_resolution: 60
grid_type: l_2
upload_interval: 24
utstep: 3600
nfrres: restart dump frequency (steps) 24
Copying IC ancils from: ../../projects/climateprediction.net/jf_15979f9ba9ad98edd65fc7ea4df72e0e to: /var/lib/boinc-client/slots/6/ic_ancil_12184713.zip
Unzipping the IC ancils zip file: /var/lib/boinc-client/slots/6/ic_ancil_12184713.zip
Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_504a333e97c5b57d4147974b61fea3c1 to: /var/lib/boinc-client/slots/6/ifsdata/ifsdata_12184713.zip
Unzipping the ifsdata_zip file: /var/lib/boinc-client/slots/6/ifsdata/ifsdata_12184713.zip
Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /var/lib/boinc-client/slots/6/159l_2/clim_data_12184713.zip
Unzipping the climate data zip file: /var/lib/boinc-client/slots/6/159l_2/clim_data_12184713.zip
Checking for progress XML file: /var/lib/boinc-client/slots/6/progress_file_12184713.xml
Creating progress file: /var/lib/boinc-client/slots/6/progress_file_12184713.xml
last_cpu_time: 0
upload_file_number: 0
last_iter: 0
last_upload: 0
model_completed: 0
total_length_of_simulation: 10627200
result_base_name: oifs_43r3_ps_0069_1999050100_123_968_12184713_0_r1416390092
The child process has been launched with process id: 8272
Executing the command: /var/lib/boinc-client/slots/6/oifs_43r3_model.exe
[EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2091] fp = 0x3129fe0
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0  (RAND_MAX=2147483647)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [ignore_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef>
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [restore_default_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef>
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [trapfpe_treatment@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x81f820 (old at (nil))
[EC_DRHOOK:client119:1:1:8272:8272] [20230121:074232:1674283352:0.000] [catch_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef>
  07:43:02 STEP    0 H=   0:00 +CPU= 27.945
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000000
  07:43:22 STEP    1 H=   1:00 +CPU= 18.834
  07:43:39 STEP    2 H=   2:00 +CPU= 17.243
  07:44:07 STEP    3 H=   3:00 +CPU= 27.032
  07:44:24 STEP    4 H=   4:00 +CPU= 17.128
  07:44:41 STEP    5 H=   5:00 +CPU= 16.608
  07:45:08 STEP    6 H=   6:00 +CPU= 27.359
  07:45:25 STEP    7 H=   7:00 +CPU= 16.636
  07:45:42 STEP    8 H=   8:00 +CPU= 17.153
  07:46:09 STEP    9 H=   9:00 +CPU= 26.739
  07:46:26 STEP   10 H=  10:00 +CPU= 17.120
  07:46:43 STEP   11 H=  11:00 +CPU= 16.609
  07:47:12 STEP   12 H=  12:00 +CPU= 29.454
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000012
  07:47:29 STEP   13 H=  13:00 +CPU= 16.649
  07:47:47 STEP   14 H=  14:00 +CPU= 17.157
  07:48:14 STEP   15 H=  15:00 +CPU= 26.687
  07:48:32 STEP   16 H=  16:00 +CPU= 17.115
  07:48:49 STEP   17 H=  17:00 +CPU= 16.584
  07:49:16 STEP   18 H=  18:00 +CPU= 27.182
  07:49:33 STEP   19 H=  19:00 +CPU= 16.511
  07:49:50 STEP   20 H=  20:00 +CPU= 17.018
  07:50:17 STEP   21 H=  21:00 +CPU= 26.554
  07:50:35 STEP   22 H=  22:00 +CPU= 17.006
  07:50:52 STEP   23 H=  23:00 +CPU= 17.016
  07:51:23 STEP   24 H=  24:00 +CPU= 30.631
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000012
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0069_1999050100_123_968_12184713_0_r1416390092_0.zip
Uploading the intermediate file: upload_file_0.zip
  07:51:41 STEP   25 H=  25:00 +CPU= 16.585
  07:51:58 STEP   26 H=  26:00 +CPU= 17.104
  07:52:25 STEP   27 H=  27:00 +CPU= 26.653
  07:52:42 STEP   28 H=  28:00 +CPU= 17.075
  07:52:59 STEP   29 H=  29:00 +CPU= 16.594
  07:53:26 STEP   30 H=  30:00 +CPU= 27.314
  07:53:43 STEP   31 H=  31:00 +CPU= 16.621
  07:54:00 STEP   32 H=  32:00 +CPU= 17.105
  07:54:27 STEP   33 H=  33:00 +CPU= 26.656
  07:54:44 STEP   34 H=  34:00 +CPU= 17.081
  07:55:01 STEP   35 H=  35:00 +CPU= 16.590
  07:55:30 STEP   36 H=  36:00 +CPU= 29.346
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000036
  07:55:47 STEP   37 H=  37:00 +CPU= 16.551
  07:56:04 STEP   38 H=  38:00 +CPU= 17.104
  07:56:31 STEP   39 H=  39:00 +CPU= 26.671
  07:56:48 STEP   40 H=  40:00 +CPU= 17.111
  07:57:04 STEP   41 H=  41:00 +CPU= 16.567
  07:57:32 STEP   42 H=  42:00 +CPU= 27.214
  07:57:49 STEP   43 H=  43:00 +CPU= 16.535
  07:58:06 STEP   44 H=  44:00 +CPU= 17.037
  07:58:33 STEP   45 H=  45:00 +CPU= 26.552
  07:58:50 STEP   46 H=  46:00 +CPU= 16.993
  07:59:08 STEP   47 H=  47:00 +CPU= 17.005
  07:59:39 STEP   48 H=  48:00 +CPU= 30.608
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000036
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0069_1999050100_123_968_12184713_0_r1416390092_1.zip
Uploading the intermediate file: upload_file_1.zip
  07:59:55 STEP   49 H=  49:00 +CPU= 16.495
  08:00:12 STEP   50 H=  50:00 +CPU= 17.012
  08:00:39 STEP   51 H=  51:00 +CPU= 26.593
  08:00:57 STEP   52 H=  52:00 +CPU= 17.049
  08:01:14 STEP   53 H=  53:00 +CPU= 16.557
  08:01:42 STEP   54 H=  54:00 +CPU= 27.254
  08:01:58 STEP   55 H=  55:00 +CPU= 16.583
  08:02:16 STEP   56 H=  56:00 +CPU= 17.105
  08:02:43 STEP   57 H=  57:00 +CPU= 26.633
  08:03:00 STEP   58 H=  58:00 +CPU= 17.076
  08:03:16 STEP   59 H=  59:00 +CPU= 16.586
  08:03:46 STEP   60 H=  60:00 +CPU= 29.395
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000060
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000060
  08:04:02 STEP   61 H=  61:00 +CPU= 16.549
  08:04:20 STEP   62 H=  62:00 +CPU= 17.065
  08:04:47 STEP   63 H=  63:00 +CPU= 26.628
  08:05:06 STEP   64 H=  64:00 +CPU= 17.165
  08:05:24 STEP   65 H=  65:00 +CPU= 16.508
  08:05:51 STEP   66 H=  66:00 +CPU= 27.203
  08:06:08 STEP   67 H=  67:00 +CPU= 16.535
  08:06:25 STEP   68 H=  68:00 +CPU= 17.067
  08:06:52 STEP   69 H=  69:00 +CPU= 26.634
  08:07:09 STEP   70 H=  70:00 +CPU= 17.039
  08:07:26 STEP   71 H=  71:00 +CPU= 17.001
  08:07:57 STEP   72 H=  72:00 +CPU= 30.623
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMGGhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMSHhq0f+000072
Moving to projects directory: /var/lib/boinc-client/slots/6/ICMUAhq0f+000072
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMGGhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMSHhq0f+000060
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12184713/ICMUAhq0f+000060
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0069_1999050100_123_968_12184713_0_r1416390092_2.zip
Uploading the intermediate file: upload_file_2.zip
  08:08:13 STEP   73 H=  73:00 +CPU= 16.497
free(): invalid pointer
double free or corruption (out)

</stderr_txt>
]]>
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