Name | oifs_43r3_ps_0505_2000050100_123_969_12186149_0 |
Workunit | 12186149 |
Created | 22 Dec 2022, 21:37:19 UTC |
Sent | 22 Dec 2022, 22:23:34 UTC |
Report deadline | 21 Jan 2023, 22:23:34 UTC |
Received | 29 Dec 2022, 19:26:23 UTC |
Server state | Over |
Outcome | Computation error |
Client state | Compute error |
Exit status | 197 (0x000000C5) EXIT_TIME_LIMIT_EXCEEDED |
Computer ID | 1526724 |
Run time | 6 days 9 hours 33 min 53 sec |
CPU time | 10 min 29 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 6.99 GFLOPS |
Application version | OpenIFS 43r3 Perturbed Surface v1.05 x86_64-pc-linux-gnu |
Peak working set size | 4.30 MB |
Peak swap size | 8.06 MB |
Peak disk usage | 1,193.92 MB |
Stderr | <core_client_version>7.20.0</core_client_version> <![CDATA[ <message> exceeded elapsed time limit 552797.17 (15744000.00G/26.61G)</message> <stderr_txt> (argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu (argv1) start_date: 2000050100 (argv2) exptid: hq0f (argv3) unique_member_id: 0505 (argv4) batchid: 969 (argv5) wuid: 12186149 (argv6) fclen: 123 (argv7) app_name: oifs_43r3_ps (argv8) nthreads: 1 Working directory is: /config/slots/7 Project directory is: /config/projects/climateprediction.net/ app name: oifs_43r3_ps version: 1.05 Location of temp folder: /config/projects/climateprediction.net/oifs_43r3_ps_12186149 Copying: /config/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Unzipping the app zip file: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Copying the namelist files from: ../../projects/climateprediction.net/jf_c1e952ac690294b6c9f649a736dcd399 to: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip Unzipping the namelist zip file: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip ic_ancil_file: ic_ancil_12186149 ifsdata_file: ifsdata_12186149 climate_data_file: clim_data_12186149 horiz_resolution: 159 vert_resolution: 60 grid_type: l_2 upload_interval: 24 utstep: 3600 nfrres: restart dump frequency (steps) 24 Copying IC ancils from: ../../projects/climateprediction.net/jf_13d41337ce50207ffc6b1e9860bc3556 to: /config/slots/7/ic_ancil_12186149.zip Unzipping the IC ancils zip file: /config/slots/7/ic_ancil_12186149.zip Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_4b6c826e54b1f69dee0e51d321013d58 to: /config/slots/7/ifsdata/ifsdata_12186149.zip Unzipping the ifsdata_zip file: /config/slots/7/ifsdata/ifsdata_12186149.zip Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /config/slots/7/159l_2/clim_data_12186149.zip Unzipping the climate data zip file: /config/slots/7/159l_2/clim_data_12186149.zip Checking for progress XML file: /config/slots/7/progress_file_12186149.xml Creating progress file: /config/slots/7/progress_file_12186149.xml last_cpu_time: 0 upload_file_number: 0 last_iter: 0 last_upload: 0 model_completed: 0 total_length_of_simulation: 10627200 result_base_name: oifs_43r3_ps_0505_2000050100_123_969_12186149_0_r281166699 The child process has been launched with process id: 18355 Executing the command: /config/slots/7/oifs_43r3_model.exe [EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2091] fp = 0x3129fe0 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0 (RAND_MAX=2147483647) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [ignore_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef> [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [restore_default_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef> [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [trapfpe_treatment@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1 [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x81f820 (old at 0x1ce8bb0) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x81f820 (old at (nil)) [EC_DRHOOK:afad633bff31:1:1:18355:18355] [20221222:232523:1671747923:0.000] [catch_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef> 23:27:20 STEP 0 H= 0:00 +CPU= 30.712 Moving to projects directory: /config/slots/7/ICMGGhq0f+000000 Moving to projects directory: /config/slots/7/ICMSHhq0f+000000 Moving to projects directory: /config/slots/7/ICMUAhq0f+000000 23:27:41 STEP 1 H= 1:00 +CPU= 19.411 23:33:24 STEP 2 H= 2:00 +CPU= 20.109 23:33:50 STEP 3 H= 3:00 +CPU= 25.600 23:34:07 STEP 4 H= 4:00 +CPU= 16.302 23:34:23 STEP 5 H= 5:00 +CPU= 15.768 23:34:48 STEP 6 H= 6:00 +CPU= 25.226 23:35:04 STEP 7 H= 7:00 +CPU= 15.695 23:35:20 STEP 8 H= 8:00 +CPU= 15.998 23:35:45 STEP 9 H= 9:00 +CPU= 24.387 23:36:00 STEP 10 H= 10:00 +CPU= 15.576 23:36:17 STEP 11 H= 11:00 +CPU= 16.056 23:36:43 STEP 12 H= 12:00 +CPU= 26.638 Moving to projects directory: /config/slots/7/ICMGGhq0f+000012 Moving to projects directory: /config/slots/7/ICMSHhq0f+000012 Moving to projects directory: /config/slots/7/ICMUAhq0f+000012 23:36:59 STEP 13 H= 13:00 +CPU= 15.492 23:37:16 STEP 14 H= 14:00 +CPU= 16.277 23:37:40 STEP 15 H= 15:00 +CPU= 24.293 23:37:56 STEP 16 H= 16:00 +CPU= 16.122 23:38:12 STEP 17 H= 17:00 +CPU= 15.808 23:38:37 STEP 18 H= 18:00 +CPU= 24.655 23:38:53 STEP 19 H= 19:00 +CPU= 15.744 23:39:09 STEP 20 H= 20:00 +CPU= 16.139 23:39:34 STEP 21 H= 21:00 +CPU= 23.976 23:39:52 STEP 22 H= 22:00 +CPU= 15.065 23:40:08 STEP 23 H= 23:00 +CPU= 15.945 23:40:53 STEP 24 H= 24:00 +CPU= 28.313 Moving to projects directory: /config/slots/7/ICMGGhq0f+000024 Moving to projects directory: /config/slots/7/ICMSHhq0f+000024 Moving to projects directory: /config/slots/7/ICMUAhq0f+000024 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMGGhq0f+000000 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMSHhq0f+000000 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMUAhq0f+000000 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMGGhq0f+000012 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMSHhq0f+000012 Adding to the zip: /config/projects/climateprediction.net/oifs_43r3_ps_12186149/ICMUAhq0f+000012 Zipping up the intermediate file: /config/projects/climateprediction.net/oifs_43r3_ps_0505_2000050100_123_969_12186149_0_r281166699_0.zip Uploading the intermediate file: upload_file_0.zip 23:41:09 STEP 25 H= 25:00 +CPU= 15.650 23:41:26 STEP 26 H= 26:00 +CPU= 16.133 23:41:50 STEP 27 H= 27:00 +CPU= 24.141 23:42:06 STEP 28 H= 28:00 +CPU= 16.130 23:42:22 STEP 29 H= 29:00 +CPU= 15.939 23:42:48 STEP 30 H= 30:00 +CPU= 25.066 23:43:03 STEP 31 H= 31:00 +CPU= 15.660 23:43:20 STEP 32 H= 32:00 +CPU= 16.095 23:43:45 STEP 33 H= 33:00 +CPU= 24.761 23:44:01 STEP 34 H= 34:00 +CPU= 16.288 23:44:17 STEP 35 H= 35:00 +CPU= 15.722 23:44:44 STEP 36 H= 36:00 +CPU= 26.823 Moving to projects directory: /config/slots/7/ICMGGhq0f+000036 Moving to projects directory: /config/slots/7/ICMSHhq0f+000036 Moving to projects directory: /config/slots/7/ICMUAhq0f+000036 23:45:01 STEP 37 H= 37:00 +CPU= 16.050 23:45:17 STEP 38 H= 38:00 +CPU= 16.536 23:45:43 STEP 39 H= 39:00 +CPU= 25.004 23:45:59 STEP 40 H= 40:00 +CPU= 16.450 23:46:15 STEP 41 H= 41:00 +CPU= 15.886 23:46:41 STEP 42 H= 42:00 +CPU= 24.879 23:46:57 STEP 43 H= 43:00 +CPU= 15.991 23:47:13 STEP 44 H= 44:00 +CPU= 16.381 23:47:41 STEP 45 H= 45:00 +CPU= 24.709 (argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu (argv1) start_date: 2000050100 (argv2) exptid: hq0f (argv3) unique_member_id: 0505 (argv4) batchid: 969 (argv5) wuid: 12186149 (argv6) fclen: 123 (argv7) app_name: oifs_43r3_ps (argv8) nthreads: 1 Working directory is: /config/slots/7 Project directory is: /config/projects/climateprediction.net/ app name: oifs_43r3_ps version: 1.05 Location of temp folder: /config/projects/climateprediction.net/oifs_43r3_ps_12186149 ..mkdir for temp folder for results failed Copying: /config/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Unzipping the app zip file: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Copying the namelist files from: ../../projects/climateprediction.net/jf_c1e952ac690294b6c9f649a736dcd399 to: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip Unzipping the namelist zip file: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip ic_ancil_file: ic_ancil_12186149 ifsdata_file: ifsdata_12186149 climate_data_file: clim_data_12186149 horiz_resolution: 159 vert_resolution: 60 grid_type: l_2 upload_interval: 24 utstep: 3600 nfrres: restart dump frequency (steps) 24 Copying IC ancils from: ../../projects/climateprediction.net/jf_13d41337ce50207ffc6b1e9860bc3556 to: /config/slots/7/ic_ancil_12186149.zip Unzipping the IC ancils zip file: /config/slots/7/ic_ancil_12186149.zip ..mkdir for ifsdata folder failed Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_4b6c826e54b1f69dee0e51d321013d58 to: /config/slots/7/ifsdata/ifsdata_12186149.zip Unzipping the ifsdata_zip file: /config/slots/7/ifsdata/ifsdata_12186149.zip ..mkdir for the climate data folder failed Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /config/slots/7/159l_2/clim_data_12186149.zip Unzipping the climate data zip file: /config/slots/7/159l_2/clim_data_12186149.zip Checking for progress XML file: /config/slots/7/progress_file_12186149.xml Opened progress file ok : /config/slots/7/progress_file_12186149.xml error: zipfile probably corrupt (segmentation violation) double free or corruption (top) (argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu (argv1) start_date: 2000050100 (argv2) exptid: hq0f (argv3) unique_member_id: 0505 (argv4) batchid: 969 (argv5) wuid: 12186149 (argv6) fclen: 123 (argv7) app_name: oifs_43r3_ps (argv8) nthreads: 1 Working directory is: /config/slots/7 Project directory is: /config/projects/climateprediction.net/ app name: oifs_43r3_ps version: 1.05 Location of temp folder: /config/projects/climateprediction.net/oifs_43r3_ps_12186149 ..mkdir for temp folder for results failed Copying: /config/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Unzipping the app zip file: /config/slots/7/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip Copying the namelist files from: ../../projects/climateprediction.net/jf_c1e952ac690294b6c9f649a736dcd399 to: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip Unzipping the namelist zip file: /config/slots/7/oifs_43r3_ps_0505_2000050100_123_969_12186149.zip ic_ancil_file: ic_ancil_12186149 ifsdata_file: ifsdata_12186149 climate_data_file: clim_data_12186149 horiz_resolution: 159 vert_resolution: 60 grid_type: l_2 upload_interval: 24 utstep: 3600 nfrres: restart dump frequency (steps) 24 Copying IC ancils from: ../../projects/climateprediction.net/jf_13d41337ce50207ffc6b1e9860bc3556 to: /config/slots/7/ic_ancil_12186149.zip Unzipping the IC ancils zip file: /config/slots/7/ic_ancil_12186149.zip ..mkdir for ifsdata folder failed Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_4b6c826e54b1f69dee0e51d321013d58 to: /config/slots/7/ifsdata/ifsdata_12186149.zip Unzipping the ifsdata_zip file: /config/slots/7/ifsdata/ifsdata_12186149.zip ..mkdir for the climate data folder failed Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /config/slots/7/159l_2/clim_data_12186149.zip Unzipping the climate data zip file: /config/slots/7/159l_2/clim_data_12186149.zip Checking for progress XML file: /config/slots/7/progress_file_12186149.xml Opened progress file ok : /config/slots/7/progress_file_12186149.xml error: zipfile probably corrupt (segmentation violation) double free or corruption (top) </stderr_txt> ]]> |
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