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Task 22293000

Task 22293000

Name oifs_43r3_ps_0756_2020050100_123_989_12206400_0
Workunit 12206400
Created 25 Dec 2022, 2:48:25 UTC
Sent 21 Jan 2023, 9:54:48 UTC
Report deadline 22 Mar 2023, 9:54:48 UTC
Received 21 Jan 2023, 10:55:28 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 5 (0x00000005) Unknown error code
Computer ID 1494551
Run time 18 min 35 sec
CPU time 18 min 27 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 6.00 GFLOPS
Application version OpenIFS 43r3 Perturbed Surface v1.05
x86_64-pc-linux-gnu
Peak working set size 4,409.37 MB
Peak swap size 4,974.12 MB
Peak disk usage 1,192.42 MB
Stderr
<core_client_version>7.16.6</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)</message>
<stderr_txt>
(argv0) ../../projects/climateprediction.net/oifs_43r3_ps_1.05_x86_64-pc-linux-gnu
(argv1) start_date: 2020050100
(argv2) exptid: hq0f
(argv3) unique_member_id: 0756
(argv4) batchid: 989
(argv5) wuid: 12206400
(argv6) fclen: 123
(argv7) app_name: oifs_43r3_ps
(argv8) nthreads: 1
Working directory is: /var/lib/boinc-client/slots/3
Project directory is: /var/lib/boinc-client/projects/climateprediction.net/
app name: oifs_43r3_ps
version: 1.05
Location of temp folder: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400
Copying: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Unzipping the app zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_app_1.05_x86_64-pc-linux-gnu.zip
Copying the namelist files from: ../../projects/climateprediction.net/jf_ef826ab77f7a9faa6c3bc753946b426e to: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0756_2020050100_123_989_12206400.zip
Unzipping the namelist zip file: /var/lib/boinc-client/slots/3/oifs_43r3_ps_0756_2020050100_123_989_12206400.zip
ic_ancil_file: ic_ancil_12206400
ifsdata_file: ifsdata_12206400
climate_data_file: clim_data_12206400
horiz_resolution: 159
vert_resolution: 60
grid_type: l_2
upload_interval: 24
utstep: 3600
nfrres: restart dump frequency (steps) 24
Copying IC ancils from: ../../projects/climateprediction.net/jf_9a743cc29b658eecfc751c764e93afd2 to: /var/lib/boinc-client/slots/3/ic_ancil_12206400.zip
Unzipping the IC ancils zip file: /var/lib/boinc-client/slots/3/ic_ancil_12206400.zip
Copying the ifsdata_file from: ../../projects/climateprediction.net/jf_5211f5062beba9f081c91b988471154c to: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12206400.zip
Unzipping the ifsdata_zip file: /var/lib/boinc-client/slots/3/ifsdata/ifsdata_12206400.zip
Copying the climate data file from: ../../projects/climateprediction.net/jf_f32c668cf7829426ffd94699b48b9a2e to: /var/lib/boinc-client/slots/3/159l_2/clim_data_12206400.zip
Unzipping the climate data zip file: /var/lib/boinc-client/slots/3/159l_2/clim_data_12206400.zip
Checking for progress XML file: /var/lib/boinc-client/slots/3/progress_file_12206400.xml
Creating progress file: /var/lib/boinc-client/slots/3/progress_file_12206400.xml
last_cpu_time: 0
upload_file_number: 0
last_iter: 0
last_upload: 0
model_completed: 0
total_length_of_simulation: 10627200
result_base_name: oifs_43r3_ps_0756_2020050100_123_989_12206400_0_r1952158733
The child process has been launched with process id: 605310
Executing the command: /var/lib/boinc-client/slots/3/oifs_43r3_model.exe
[EC_DRHOOK:hostname:myproc:omptid:pid:unixtid] [YYYYMMDD:HHMMSS:epoch:walltime] [function@file:lineno] -- Max OpenMP threads = 1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2091] fp = 0x3129fe0
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2098] DR_HOOK_ALLOW_COREDUMP=-1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2104] Hardlimit for core file is now 0 (0x0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2122] DR_HOOK_PROFILE_PROC=-1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2128] DR_HOOK_PROFILE_LIMIT=-10.000
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2194] DR_HOOK_RANDOM_MEMSTAT=0  (RAND_MAX=2147483647)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2205] DR_HOOK_HASHBITS=16
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2213] DR_HOOK_NCALLSTACK=0
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2221] DR_HOOK_HARAKIRI_TIMEOUT=500
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2228] DR_HOOK_TRAPFPE=1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2235] DR_HOOK_TRAPFPE_INVALID=1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2242] DR_HOOK_TRAPFPE_DIVBYZERO=1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [process_options@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:2249] DR_HOOK_TRAPFPE_OVERFLOW=1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [ignore_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1227] DR_HOOK_IGNORE_SIGNALS=<undef>
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [restore_default_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1178] DR_HOOK_RESTORE_DEFAULT_SIGNALS=<undef>
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1937] New signal handler 'signal_drhook' for signal#6 (SIGABRT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1938] New signal handler 'signal_drhook' for signal#7 (SIGBUS) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1939] New signal handler 'signal_drhook' for signal#11 (SIGSEGV) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1944] New signal handler 'signal_drhook' for signal#16 (SIGSTKFLT) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [trapfpe_treatment@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1149] DR_HOOK enables SIGFPE-related floating point trapping since DRHOOK_TRAPFPE=1
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1948] New signal handler 'signal_drhook' for signal#8 (SIGFPE) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1949] New signal handler 'signal_drhook' for signal#4 (SIGILL) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1951] New signal handler 'signal_drhook' for signal#5 (SIGTRAP) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1952] New signal handler 'signal_drhook' for signal#2 (SIGINT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1960] New signal handler 'signal_drhook' for signal#3 (SIGQUIT) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1961] New signal handler 'signal_drhook' for signal#15 (SIGTERM) at 0x81f820 (old at 0x1ce8bb0)
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1966] New signal handler 'signal_drhook' for signal#24 (SIGXCPU) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1968] New signal handler 'signal_drhook' for signal#25 (SIGXFSZ) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [signal_drhook_init@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1973] New signal handler 'signal_drhook' for signal#31 (SIGSYS) at 0x81f820 (old at (nil))
[EC_DRHOOK:27:1:1:605310:605310] [20230121:105704:1674295024:0.000] [catch_signals@/home/glenn/github/jamie_oifs43r3.git/src/ifsaux/support/drhook.c:1111] DR_HOOK_CATCH_SIGNALS=<undef>
  10:57:33 STEP    0 H=   0:00 +CPU= 26.466
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000000
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000000
  10:57:52 STEP    1 H=   1:00 +CPU= 18.994
  10:58:09 STEP    2 H=   2:00 +CPU= 17.158
  10:58:35 STEP    3 H=   3:00 +CPU= 26.248
  10:58:53 STEP    4 H=   4:00 +CPU= 17.737
  10:59:11 STEP    5 H=   5:00 +CPU= 18.199
  10:59:40 STEP    6 H=   6:00 +CPU= 28.574
  10:59:58 STEP    7 H=   7:00 +CPU= 17.663
  11:00:16 STEP    8 H=   8:00 +CPU= 18.609
  11:00:45 STEP    9 H=   9:00 +CPU= 28.200
  11:01:03 STEP   10 H=  10:00 +CPU= 18.225
  11:01:21 STEP   11 H=  11:00 +CPU= 18.067
  11:01:52 STEP   12 H=  12:00 +CPU= 30.909
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000012
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000012
  11:02:10 STEP   13 H=  13:00 +CPU= 17.847
  11:02:29 STEP   14 H=  14:00 +CPU= 18.761
  11:02:57 STEP   15 H=  15:00 +CPU= 27.881
  11:03:15 STEP   16 H=  16:00 +CPU= 18.077
  11:03:33 STEP   17 H=  17:00 +CPU= 17.851
  11:04:02 STEP   18 H=  18:00 +CPU= 28.636
  11:04:20 STEP   19 H=  19:00 +CPU= 17.812
  11:04:38 STEP   20 H=  20:00 +CPU= 18.344
  11:05:06 STEP   21 H=  21:00 +CPU= 27.820
  11:05:24 STEP   22 H=  22:00 +CPU= 18.044
  11:05:42 STEP   23 H=  23:00 +CPU= 18.102
  11:06:15 STEP   24 H=  24:00 +CPU= 32.694
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000024
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMGGhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMSHhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMUAhq0f+000000
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMGGhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMSHhq0f+000012
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMUAhq0f+000012
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0756_2020050100_123_989_12206400_0_r1952158733_0.zip
Uploading the intermediate file: upload_file_0.zip
  11:06:33 STEP   25 H=  25:00 +CPU= 18.061
  11:06:52 STEP   26 H=  26:00 +CPU= 18.457
  11:07:20 STEP   27 H=  27:00 +CPU= 27.952
  11:07:38 STEP   28 H=  28:00 +CPU= 18.145
  11:07:56 STEP   29 H=  29:00 +CPU= 17.822
  11:08:25 STEP   30 H=  30:00 +CPU= 28.405
  11:08:42 STEP   31 H=  31:00 +CPU= 17.703
  11:09:01 STEP   32 H=  32:00 +CPU= 18.449
  11:09:29 STEP   33 H=  33:00 +CPU= 27.826
  11:09:47 STEP   34 H=  34:00 +CPU= 18.206
  11:10:05 STEP   35 H=  35:00 +CPU= 17.649
  11:10:36 STEP   36 H=  36:00 +CPU= 30.667
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000036
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000036
  11:10:54 STEP   37 H=  37:00 +CPU= 17.771
  11:11:12 STEP   38 H=  38:00 +CPU= 18.272
  11:11:40 STEP   39 H=  39:00 +CPU= 27.628
  11:11:58 STEP   40 H=  40:00 +CPU= 18.639
  11:12:16 STEP   41 H=  41:00 +CPU= 17.935
  11:12:45 STEP   42 H=  42:00 +CPU= 28.547
  11:13:03 STEP   43 H=  43:00 +CPU= 17.660
  11:13:21 STEP   44 H=  44:00 +CPU= 18.346
  11:13:49 STEP   45 H=  45:00 +CPU= 27.251
  11:14:07 STEP   46 H=  46:00 +CPU= 18.268
  11:14:25 STEP   47 H=  47:00 +CPU= 18.238
  11:14:58 STEP   48 H=  48:00 +CPU= 32.259
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMGGhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMSHhq0f+000048
Moving to projects directory: /var/lib/boinc-client/slots/3/ICMUAhq0f+000048
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMGGhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMSHhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMUAhq0f+000024
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMGGhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMSHhq0f+000036
Adding to the zip: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_12206400/ICMUAhq0f+000036
Zipping up the intermediate file: /var/lib/boinc-client/projects/climateprediction.net/oifs_43r3_ps_0756_2020050100_123_989_12206400_0_r1952158733_1.zip
Uploading the intermediate file: upload_file_1.zip
  11:15:16 STEP   49 H=  49:00 +CPU= 17.967
  11:15:34 STEP   50 H=  50:00 +CPU= 18.114
free(): invalid pointer
double free or corruption (out)

</stderr_txt>
]]>
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